No. words: 1376; after pruning: 1350


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:658)  634  0.00 0.30 0.15  UCW008F_G01_BE443187Ld07P013F02F081F1_003.ab1        2   659 (29)  C UCW008R_G01_BE443187Ld07P013F02F081R1_003.ab1   (29)   659     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C UCW008R_G01_BE443187Ld07P013F02F081R1_003.ab1   688 
   57    UCW008F_G01_BE443187Ld07P013F02F081F1_003.ab1    27 
   65  C UCW008R_G01_BE443187Ld07P013F02F081R1_003.ab1   624 
   97    UCW008F_G01_BE443187Ld07P013F02F081F1_003.ab1    67 
  117  C UCW008R_G01_BE443187Ld07P013F02F081R1_003.ab1   572 
  121    UCW008F_G01_BE443187Ld07P013F02F081F1_003.ab1    91 
  129  C UCW008R_G01_BE443187Ld07P013F02F081R1_003.ab1   560 
  657    UCW008F_G01_BE443187Ld07P013F02F081F1_003.ab1   627 
  665  C UCW008R_G01_BE443187Ld07P013F02F081R1_003.ab1    24 
  669    UCW008F_G01_BE443187Ld07P013F02F081F1_003.ab1   639 
  678  C UCW008R_G01_BE443187Ld07P013F02F081R1_003.ab1    12 
  682    UCW008F_G01_BE443187Ld07P013F02F081F1_003.ab1   652 
Contig length: old 717, new 718

Contig length: old 718, new 718
New start: 0