No. words: 1368; after pruning: 1342


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.8 (1,1:656)  628  0.00 0.46 0.15  UCW008F_B02_BE443187Ld10P013F02F081F1_014.ab1        2   657 (34)  C UCW008R_B02_BE443187Ld10P013F02F081R1_014.ab1   (19)   658     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C UCW008R_B02_BE443187Ld10P013F02F081R1_014.ab1   677 
  550    UCW008F_B02_BE443187Ld10P013F02F081F1_014.ab1   529 
  554  C UCW008R_B02_BE443187Ld10P013F02F081R1_014.ab1   124 
  602    UCW008F_B02_BE443187Ld10P013F02F081F1_014.ab1   581 
  606  C UCW008R_B02_BE443187Ld10P013F02F081R1_014.ab1    72 
  646    UCW008F_B02_BE443187Ld10P013F02F081F1_014.ab1   625 
Contig length: old 711, new 712

Contig length: old 712, new 712
New start: 0