No. words: 1351; after pruning: 1325


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:634)  612  0.16 0.16 0.16  UCW065_C02_BE443187Ta11P033B06P013F081F1_012.ab1        1   635 (34)  C UCW066_C02_BE443187Ta11P033B06P013F081R1_012.ab1   (47)   635     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCW066_C02_BE443187Ta11P033B06P013F081R1_012.ab1   682 
  111    UCW065_C02_BE443187Ta11P033B06P013F081F1_012.ab1    63 
  123  C UCW066_C02_BE443187Ta11P033B06P013F081R1_012.ab1   560 
  195    UCW065_C02_BE443187Ta11P033B06P013F081F1_012.ab1   147 
  199  C UCW066_C02_BE443187Ta11P033B06P013F081R1_012.ab1   484 
  507    UCW065_C02_BE443187Ta11P033B06P013F081F1_012.ab1   459 
Contig length: old 716, new 717

Contig length: old 717, new 717
New start: 0