No. words: 1338; after pruning: 1312


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:632)  607  0.32 0.16 0.16  UCW065_D02_BE443187Ta12P033B06P013F081F1_010.ab1        1   633 (34)  C UCW066_D02_BE443187Ta12P033B06P013F081R1_010.ab1   (38)   633     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C UCW066_D02_BE443187Ta12P033B06P013F081R1_010.ab1   671 
   97    UCW065_D02_BE443187Ta12P033B06P013F081F1_010.ab1    58 
  101  C UCW066_D02_BE443187Ta12P033B06P013F081R1_010.ab1   571 
  541    UCW065_D02_BE443187Ta12P033B06P013F081F1_010.ab1   502 
Contig length: old 705, new 706

Contig length: old 706, new 706
New start: 0