No. words: 1343; after pruning: 1317


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:627)  614  0.00 0.16 0.00  UCW063_F08_BE443187Ta14P033A06P013F081F1_054.ab1        1   628 (48)  C UCW064_F08_BE443187Ta14P033A06P013F081R1_054.ab1   (38)   629     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C UCW064_F08_BE443187Ta14P033A06P013F081R1_054.ab1   667 
   49    UCW063_F08_BE443187Ta14P033A06P013F081F1_054.ab1    10 
   53  C UCW064_F08_BE443187Ta14P033A06P013F081R1_054.ab1   615 
   65    UCW063_F08_BE443187Ta14P033A06P013F081F1_054.ab1    26 
   77  C UCW064_F08_BE443187Ta14P033A06P013F081R1_054.ab1   591 
   85    UCW063_F08_BE443187Ta14P033A06P013F081F1_054.ab1    46 
  105  C UCW064_F08_BE443187Ta14P033A06P013F081R1_054.ab1   563 
  113    UCW063_F08_BE443187Ta14P033A06P013F081F1_054.ab1    74 
  161  C UCW064_F08_BE443187Ta14P033A06P013F081R1_054.ab1   507 
  177    UCW063_F08_BE443187Ta14P033A06P013F081F1_054.ab1   138 
  197  C UCW064_F08_BE443187Ta14P033A06P013F081R1_054.ab1   471 
  217    UCW063_F08_BE443187Ta14P033A06P013F081F1_054.ab1   178 
  245  C UCW064_F08_BE443187Ta14P033A06P013F081R1_054.ab1   423 
  249    UCW063_F08_BE443187Ta14P033A06P013F081F1_054.ab1   210 
  313  C UCW064_F08_BE443187Ta14P033A06P013F081R1_054.ab1   355 
  329    UCW063_F08_BE443187Ta14P033A06P013F081F1_054.ab1   290 
  373  C UCW064_F08_BE443187Ta14P033A06P013F081R1_054.ab1   295 
  505    UCW063_F08_BE443187Ta14P033A06P013F081F1_054.ab1   466 
  517  C UCW064_F08_BE443187Ta14P033A06P013F081R1_054.ab1   151 
  577    UCW063_F08_BE443187Ta14P033A06P013F081F1_054.ab1   538 
  581  C UCW064_F08_BE443187Ta14P033A06P013F081R1_054.ab1    87 
  621    UCW063_F08_BE443187Ta14P033A06P013F081F1_054.ab1   582 
  637  C UCW064_F08_BE443187Ta14P033A06P013F081R1_054.ab1    31 
  645    UCW063_F08_BE443187Ta14P033A06P013F081F1_054.ab1   606 
Contig length: old 715, new 715

Contig length: old 715, new 715
New start: 0