No. words: 1336; after pruning: 1310


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.3 (1,1:625)  609  0.00 0.16 0.00  UCW063_H08_BE443187Ta16P033A06P013F081F1_050.ab1        1   623 (51)  C UCW064_H08_BE443187Ta16P033A06P013F081R1_050.ab1   (35)   627     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCW064_H08_BE443187Ta16P033A06P013F081R1_050.ab1   662 
   81    UCW063_H08_BE443187Ta16P033A06P013F081F1_050.ab1    45 
   89  C UCW064_H08_BE443187Ta16P033A06P013F081R1_050.ab1   574 
   93    UCW063_H08_BE443187Ta16P033A06P013F081F1_050.ab1    57 
  101  C UCW064_H08_BE443187Ta16P033A06P013F081R1_050.ab1   562 
  109    UCW063_H08_BE443187Ta16P033A06P013F081F1_050.ab1    73 
  161  C UCW064_H08_BE443187Ta16P033A06P013F081R1_050.ab1   502 
  185    UCW063_H08_BE443187Ta16P033A06P013F081F1_050.ab1   149 
  189  C UCW064_H08_BE443187Ta16P033A06P013F081R1_050.ab1   474 
  209    UCW063_H08_BE443187Ta16P033A06P013F081F1_050.ab1   173 
  217  C UCW064_H08_BE443187Ta16P033A06P013F081R1_050.ab1   446 
  253    UCW063_H08_BE443187Ta16P033A06P013F081F1_050.ab1   217 
  269  C UCW064_H08_BE443187Ta16P033A06P013F081R1_050.ab1   394 
  317    UCW063_H08_BE443187Ta16P033A06P013F081F1_050.ab1   281 
  349  C UCW064_H08_BE443187Ta16P033A06P013F081R1_050.ab1   314 
  545    UCW063_H08_BE443187Ta16P033A06P013F081F1_050.ab1   509 
  557  C UCW064_H08_BE443187Ta16P033A06P013F081R1_050.ab1   106 
  569    UCW063_H08_BE443187Ta16P033A06P013F081F1_050.ab1   533 
  609  C UCW064_H08_BE443187Ta16P033A06P013F081R1_050.ab1    54 
  625    UCW063_H08_BE443187Ta16P033A06P013F081F1_050.ab1   589 
  629  C UCW064_H08_BE443187Ta16P033A06P013F081R1_050.ab1    34 
  641    UCW063_H08_BE443187Ta16P033A06P013F081F1_050.ab1   605 
Contig length: old 710, new 710

Contig length: old 710, new 710
New start: 0