No. words: 1344; after pruning: 1318


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.7 (1,1:638)  615  0.00 0.16 0.16  UCW065_H02_BE443187Ta16P033B06P013F081F1_002.ab1        4   639 (33)  C UCW066_H02_BE443187Ta16P033B06P013F081R1_002.ab1   (36)   636     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C UCW066_H02_BE443187Ta16P033B06P013F081R1_002.ab1   672 
  533    UCW065_H02_BE443187Ta16P033B06P013F081F1_002.ab1   499 
Contig length: old 705, new 706

Contig length: old 706, new 706
New start: 0