No. words: 1341; after pruning: 1315


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:632)  613  0.00 0.16 0.16  UCW063_B09_BE443187Ta18P033A06P013F081F1_077.ab1        1   633 (39)  C UCW064_B09_BE443187Ta18P033A06P013F081R1_077.ab1   (36)   633     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C UCW064_B09_BE443187Ta18P033A06P013F081R1_077.ab1   669 
  158    UCW063_B09_BE443187Ta18P033A06P013F081F1_077.ab1   121 
  194  C UCW064_B09_BE443187Ta18P033A06P013F081R1_077.ab1   476 
  258    UCW063_B09_BE443187Ta18P033A06P013F081F1_077.ab1   221 
  342  C UCW064_B09_BE443187Ta18P033A06P013F081R1_077.ab1   328 
  454    UCW063_B09_BE443187Ta18P033A06P013F081F1_077.ab1   417 
  510  C UCW064_B09_BE443187Ta18P033A06P013F081R1_077.ab1   160 
  546    UCW063_B09_BE443187Ta18P033A06P013F081F1_077.ab1   509 
Contig length: old 708, new 709

Contig length: old 709, new 709
New start: 0