No. words: 1345; after pruning: 1319


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.2 (1,1:621)  607  0.00 0.00 0.00  UCW063_C09_BE443187Ta19P033A06P013F081F1_075.ab1        2   619 (52)  C UCW064_C09_BE443187Ta19P033A06P013F081R1_075.ab1   (53)   621     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCW064_C09_BE443187Ta19P033A06P013F081R1_075.ab1   674 
   93    UCW063_C09_BE443187Ta19P033A06P013F081F1_075.ab1    41 
  113  C UCW064_C09_BE443187Ta19P033A06P013F081R1_075.ab1   562 
  117    UCW063_C09_BE443187Ta19P033A06P013F081F1_075.ab1    65 
  129  C UCW064_C09_BE443187Ta19P033A06P013F081R1_075.ab1   546 
  133    UCW063_C09_BE443187Ta19P033A06P013F081F1_075.ab1    81 
  205  C UCW064_C09_BE443187Ta19P033A06P013F081R1_075.ab1   470 
  209    UCW063_C09_BE443187Ta19P033A06P013F081F1_075.ab1   157 
  497  C UCW064_C09_BE443187Ta19P033A06P013F081R1_075.ab1   178 
  541    UCW063_C09_BE443187Ta19P033A06P013F081F1_075.ab1   489 
Contig length: old 723, new 723

Contig length: old 723, new 723
New start: 0