No. words: 1335; after pruning: 1309


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:630)  611  0.00 0.16 0.16  UCW065_C03_BE443187Ta19P033B06P013F081F1_027.ab1        1   631 (36)  C UCW066_C03_BE443187Ta19P033B06P013F081R1_027.ab1   (37)   631     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C UCW066_C03_BE443187Ta19P033B06P013F081R1_027.ab1   668 
   73    UCW065_C03_BE443187Ta19P033B06P013F081F1_027.ab1    35 
   81  C UCW066_C03_BE443187Ta19P033B06P013F081R1_027.ab1   588 
   93    UCW065_C03_BE443187Ta19P033B06P013F081F1_027.ab1    55 
   97  C UCW066_C03_BE443187Ta19P033B06P013F081R1_027.ab1   572 
  181    UCW065_C03_BE443187Ta19P033B06P013F081F1_027.ab1   143 
  185  C UCW066_C03_BE443187Ta19P033B06P013F081R1_027.ab1   484 
  377    UCW065_C03_BE443187Ta19P033B06P013F081F1_027.ab1   339 
Contig length: old 704, new 705

Contig length: old 705, new 705
New start: 0