No. words: 1346; after pruning: 1320


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.9 (1,1:621)  607  0.00 0.00 0.00  UCW063_D09_BE443187Ta20P033A06P013F081F1_073.ab1        2   619 (52)  C UCW064_D09_BE443187Ta20P033A06P013F081R1_073.ab1   (54)   621     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCW064_D09_BE443187Ta20P033A06P013F081R1_073.ab1   675 
   58    UCW063_D09_BE443187Ta20P033A06P013F081F1_073.ab1     5 
   62  C UCW064_D09_BE443187Ta20P033A06P013F081R1_073.ab1   614 
   66    UCW063_D09_BE443187Ta20P033A06P013F081F1_073.ab1    13 
  114  C UCW064_D09_BE443187Ta20P033A06P013F081R1_073.ab1   562 
  118    UCW063_D09_BE443187Ta20P033A06P013F081F1_073.ab1    65 
  130  C UCW064_D09_BE443187Ta20P033A06P013F081R1_073.ab1   546 
  134    UCW063_D09_BE443187Ta20P033A06P013F081F1_073.ab1    81 
  302  C UCW064_D09_BE443187Ta20P033A06P013F081R1_073.ab1   374 
  310    UCW063_D09_BE443187Ta20P033A06P013F081F1_073.ab1   257 
  326  C UCW064_D09_BE443187Ta20P033A06P013F081R1_073.ab1   350 
  338    UCW063_D09_BE443187Ta20P033A06P013F081F1_073.ab1   285 
  426  C UCW064_D09_BE443187Ta20P033A06P013F081R1_073.ab1   250 
  434    UCW063_D09_BE443187Ta20P033A06P013F081F1_073.ab1   381 
  462  C UCW064_D09_BE443187Ta20P033A06P013F081R1_073.ab1   214 
  490    UCW063_D09_BE443187Ta20P033A06P013F081F1_073.ab1   437 
  502  C UCW064_D09_BE443187Ta20P033A06P013F081R1_073.ab1   174 
  558    UCW063_D09_BE443187Ta20P033A06P013F081F1_073.ab1   505 
  614  C UCW064_D09_BE443187Ta20P033A06P013F081R1_073.ab1    62 
  618    UCW063_D09_BE443187Ta20P033A06P013F081F1_073.ab1   565 
  626  C UCW064_D09_BE443187Ta20P033A06P013F081R1_073.ab1    50 
  630    UCW063_D09_BE443187Ta20P033A06P013F081F1_073.ab1   577 
  646  C UCW064_D09_BE443187Ta20P033A06P013F081R1_073.ab1    30 
  654    UCW063_D09_BE443187Ta20P033A06P013F081F1_073.ab1   601 
Contig length: old 724, new 724

Contig length: old 724, new 724
New start: 0