No. words: 1287; after pruning: 1261


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.6 (1,1:625)  590  0.49 0.00 0.00  UCW063_B07_BE443187Td02P033A06P013F081F1_061.ab1       15   623 (52)  C UCW064_B07_BE443187Td02P033A06P013F081R1_061.ab1   (0)   612     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1    UCW063_B07_BE443187Td02P033A06P013F081F1_061.ab1     1 
  373  C UCW064_B07_BE443187Td02P033A06P013F081R1_061.ab1   254 
  377    UCW063_B07_BE443187Td02P033A06P013F081F1_061.ab1   377 
  409  C UCW064_B07_BE443187Td02P033A06P013F081R1_061.ab1   218 
  425    UCW063_B07_BE443187Td02P033A06P013F081F1_061.ab1   425 
  497  C UCW064_B07_BE443187Td02P033A06P013F081R1_061.ab1   130 
  505    UCW063_B07_BE443187Td02P033A06P013F081F1_061.ab1   505 
  595  C UCW064_B07_BE443187Td02P033A06P013F081R1_061.ab1    32 
  603    UCW063_B07_BE443187Td02P033A06P013F081F1_061.ab1   603 
Contig length: old 675, new 675

Contig length: old 675, new 675
New start: 0