No. words: 1339; after pruning: 1313


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:633)  605  0.47 0.16 0.16  UCW065_B01_BE443187Td02P033B06P013F081F1_013.ab1        1   634 (34)  C UCW066_B01_BE443187Td02P033B06P013F081R1_013.ab1   (37)   634     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C UCW066_B01_BE443187Td02P033B06P013F081R1_013.ab1   671 
  378    UCW065_B01_BE443187Td02P033B06P013F081F1_013.ab1   340 
  390  C UCW066_B01_BE443187Td02P033B06P013F081R1_013.ab1   282 
  614    UCW065_B01_BE443187Td02P033B06P013F081F1_013.ab1   576 
Contig length: old 705, new 706

Contig length: old 706, new 706
New start: 0