No. words: 1341; after pruning: 1315


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:638)  612  0.00 0.31 0.31  UCW065_C01_BE443187Td03P033B06P013F081F1_011.ab1        1   640 (31)  C UCW066_C01_BE443187Td03P033B06P013F081R1_011.ab1   (30)   640     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCW066_C01_BE443187Td03P033B06P013F081R1_011.ab1   670 
   97    UCW065_C01_BE443187Td03P033B06P013F081F1_011.ab1    65 
  109  C UCW066_C01_BE443187Td03P033B06P013F081R1_011.ab1   562 
  173    UCW065_C01_BE443187Td03P033B06P013F081F1_011.ab1   141 
  185  C UCW066_C01_BE443187Td03P033B06P013F081R1_011.ab1   486 
  377    UCW065_C01_BE443187Td03P033B06P013F081F1_011.ab1   345 
  401  C UCW066_C01_BE443187Td03P033B06P013F081R1_011.ab1   270 
  469    UCW065_C01_BE443187Td03P033B06P013F081F1_011.ab1   437 
Contig length: old 702, new 703

Contig length: old 703, new 703
New start: 0