No. words: 1344; after pruning: 1318


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:632)  614  0.00 0.16 0.16  UCW063_D07_BE443187Td04P033A06P013F081F1_057.ab1        1   633 (42)  C UCW064_D07_BE443187Td04P033A06P013F081R1_057.ab1   (36)   633     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C UCW064_D07_BE443187Td04P033A06P013F081R1_057.ab1   669 
   94    UCW063_D07_BE443187Td04P033A06P013F081F1_057.ab1    57 
  102  C UCW064_D07_BE443187Td04P033A06P013F081R1_057.ab1   568 
  110    UCW063_D07_BE443187Td04P033A06P013F081F1_057.ab1    73 
  194  C UCW064_D07_BE443187Td04P033A06P013F081R1_057.ab1   476 
  218    UCW063_D07_BE443187Td04P033A06P013F081F1_057.ab1   181 
  314  C UCW064_D07_BE443187Td04P033A06P013F081R1_057.ab1   356 
  342    UCW063_D07_BE443187Td04P033A06P013F081F1_057.ab1   305 
  498  C UCW064_D07_BE443187Td04P033A06P013F081R1_057.ab1   172 
  526    UCW063_D07_BE443187Td04P033A06P013F081F1_057.ab1   489 
  566  C UCW064_D07_BE443187Td04P033A06P013F081R1_057.ab1   104 
  574    UCW063_D07_BE443187Td04P033A06P013F081F1_057.ab1   537 
  614  C UCW064_D07_BE443187Td04P033A06P013F081R1_057.ab1    56 
  618    UCW063_D07_BE443187Td04P033A06P013F081F1_057.ab1   581 
  634  C UCW064_D07_BE443187Td04P033A06P013F081R1_057.ab1    36 
  642    UCW063_D07_BE443187Td04P033A06P013F081F1_057.ab1   605 
Contig length: old 711, new 712

Contig length: old 712, new 712
New start: 0