No. words: 1339; after pruning: 1313


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 13.2 (1,1:617)  607  0.00 0.00 0.00  UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1        2   618 (52)  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1   (52)   617     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1   669 
   96    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1    45 
  100  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1   570 
  104    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1    53 
  112  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1   558 
  120    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1    69 
  168  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1   502 
  172    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1   121 
  204  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1   466 
  216    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1   165 
  292  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1   378 
  300    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1   249 
  324  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1   346 
  328    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1   277 
  336  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1   334 
  348    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1   297 
  368  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1   302 
  392    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1   341 
  408  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1   262 
  412    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1   361 
  444  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1   226 
  452    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1   401 
  464  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1   206 
  484    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1   433 
  524  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1   146 
  552    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1   501 
  576  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1    94 
  584    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1   533 
  592  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1    78 
  604    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1   553 
  640  C UCW064_E07_BE443187Td05P033A06P013F081R1_055.ab1    30 
  652    UCW063_E07_BE443187Td05P033A06P013F081F1_055.ab1   601 
Contig length: old 721, new 721

Contig length: old 721, new 721
New start: 0