No. words: 1234; after pruning: 1208


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:614)  544  0.00 0.00 0.00  UCW063_F07_BE443187Td06P033A06P013F081F1_053.ab1       59   615 (62)  C UCW064_F07_BE443187Td06P033A06P013F081R1_053.ab1   (0)   557     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1    UCW063_F07_BE443187Td06P033A06P013F081F1_053.ab1     1 
  302  C UCW064_F07_BE443187Td06P033A06P013F081R1_053.ab1   314 
  306    UCW063_F07_BE443187Td06P033A06P013F081F1_053.ab1   306 
  318  C UCW064_F07_BE443187Td06P033A06P013F081R1_053.ab1   298 
  322    UCW063_F07_BE443187Td06P033A06P013F081F1_053.ab1   322 
  350  C UCW064_F07_BE443187Td06P033A06P013F081R1_053.ab1   266 
  358    UCW063_F07_BE443187Td06P033A06P013F081F1_053.ab1   358 
  362  C UCW064_F07_BE443187Td06P033A06P013F081R1_053.ab1   254 
  366    UCW063_F07_BE443187Td06P033A06P013F081F1_053.ab1   366 
  430  C UCW064_F07_BE443187Td06P033A06P013F081R1_053.ab1   186 
  438    UCW063_F07_BE443187Td06P033A06P013F081F1_053.ab1   438 
  462  C UCW064_F07_BE443187Td06P033A06P013F081R1_053.ab1   154 
  506    UCW063_F07_BE443187Td06P033A06P013F081F1_053.ab1   506 
  518  C UCW064_F07_BE443187Td06P033A06P013F081R1_053.ab1    98 
  550    UCW063_F07_BE443187Td06P033A06P013F081F1_053.ab1   550 
  558  C UCW064_F07_BE443187Td06P033A06P013F081R1_053.ab1    58 
  578    UCW063_F07_BE443187Td06P033A06P013F081F1_053.ab1   578 
  586  C UCW064_F07_BE443187Td06P033A06P013F081R1_053.ab1    30 
  598    UCW063_F07_BE443187Td06P033A06P013F081F1_053.ab1   598 
Contig length: old 677, new 677

Contig length: old 677, new 677
New start: 0