No. words: 1336; after pruning: 1310


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 11.5 (1,1:637)  618  0.00 0.00 0.16  UCW065_F01_BE443187Td06P033B06P013F081F1_005.ab1        5   638 (32)  C UCW066_F01_BE443187Td06P033B06P013F081R1_005.ab1   (33)   633     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C UCW066_F01_BE443187Td06P033B06P013F081R1_005.ab1   666 
  521    UCW065_F01_BE443187Td06P033B06P013F081F1_005.ab1   492 
Contig length: old 698, new 699

Contig length: old 699, new 699
New start: 0