No. words: 1340; after pruning: 1314


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.4 (1,1:611)  595  0.16 0.16 0.00  UCW063_G07_BE443187Td07P033A06P013F081F1_051.ab1        1   612 (75)  C UCW064_G07_BE443187Td07P033A06P013F081R1_051.ab1   (40)   613     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C UCW064_G07_BE443187Td07P033A06P013F081R1_051.ab1   653 
   66    UCW063_G07_BE443187Td07P033A06P013F081F1_051.ab1    25 
   94  C UCW064_G07_BE443187Td07P033A06P013F081R1_051.ab1   560 
   98    UCW063_G07_BE443187Td07P033A06P013F081F1_051.ab1    57 
  194  C UCW064_G07_BE443187Td07P033A06P013F081R1_051.ab1   460 
  198    UCW063_G07_BE443187Td07P033A06P013F081F1_051.ab1   157 
  206  C UCW064_G07_BE443187Td07P033A06P013F081R1_051.ab1   448 
  238    UCW063_G07_BE443187Td07P033A06P013F081F1_051.ab1   197 
  290  C UCW064_G07_BE443187Td07P033A06P013F081R1_051.ab1   364 
  302    UCW063_G07_BE443187Td07P033A06P013F081F1_051.ab1   261 
  358  C UCW064_G07_BE443187Td07P033A06P013F081R1_051.ab1   296 
  370    UCW063_G07_BE443187Td07P033A06P013F081F1_051.ab1   329 
  522  C UCW064_G07_BE443187Td07P033A06P013F081R1_051.ab1   132 
  526    UCW063_G07_BE443187Td07P033A06P013F081F1_051.ab1   485 
  534  C UCW064_G07_BE443187Td07P033A06P013F081R1_051.ab1   120 
  542    UCW063_G07_BE443187Td07P033A06P013F081F1_051.ab1   501 
  558  C UCW064_G07_BE443187Td07P033A06P013F081R1_051.ab1    96 
  562    UCW063_G07_BE443187Td07P033A06P013F081F1_051.ab1   521 
  586  C UCW064_G07_BE443187Td07P033A06P013F081R1_051.ab1    68 
  590    UCW063_G07_BE443187Td07P033A06P013F081F1_051.ab1   549 
Contig length: old 728, new 728

Contig length: old 728, new 728
New start: 0