No. words: 1334; after pruning: 1308


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:634)  612  0.16 0.16 0.16  UCW065_G01_BE443187Td07P033B06P013F081F1_003.ab1        1   635 (30)  C UCW066_G01_BE443187Td07P033B06P013F081R1_003.ab1   (34)   635     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCW066_G01_BE443187Td07P033B06P013F081R1_003.ab1   669 
  562    UCW065_G01_BE443187Td07P033B06P013F081F1_003.ab1   527 
Contig length: old 699, new 700

Contig length: old 700, new 700
New start: 0