No. words: 1341; after pruning: 1315


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.6 (1,1:627)  609  0.00 0.16 0.16  UCW063_H07_BE443187Td08P033A06P013F081F1_049.ab1        1   628 (46)  C UCW064_H07_BE443187Td08P033A06P013F081R1_049.ab1   (39)   628     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCW064_H07_BE443187Td08P033A06P013F081R1_049.ab1   667 
   85    UCW063_H07_BE443187Td08P033A06P013F081F1_049.ab1    45 
   93  C UCW064_H07_BE443187Td08P033A06P013F081R1_049.ab1   575 
  101    UCW063_H07_BE443187Td08P033A06P013F081F1_049.ab1    61 
  105  C UCW064_H07_BE443187Td08P033A06P013F081R1_049.ab1   563 
  113    UCW063_H07_BE443187Td08P033A06P013F081F1_049.ab1    73 
  125  C UCW064_H07_BE443187Td08P033A06P013F081R1_049.ab1   543 
  141    UCW063_H07_BE443187Td08P033A06P013F081F1_049.ab1   101 
  149  C UCW064_H07_BE443187Td08P033A06P013F081R1_049.ab1   519 
  153    UCW063_H07_BE443187Td08P033A06P013F081F1_049.ab1   113 
  169  C UCW064_H07_BE443187Td08P033A06P013F081R1_049.ab1   499 
  177    UCW063_H07_BE443187Td08P033A06P013F081F1_049.ab1   137 
  185  C UCW064_H07_BE443187Td08P033A06P013F081R1_049.ab1   483 
  253    UCW063_H07_BE443187Td08P033A06P013F081F1_049.ab1   213 
  265  C UCW064_H07_BE443187Td08P033A06P013F081R1_049.ab1   403 
  385    UCW063_H07_BE443187Td08P033A06P013F081F1_049.ab1   345 
  389  C UCW064_H07_BE443187Td08P033A06P013F081R1_049.ab1   279 
  501    UCW063_H07_BE443187Td08P033A06P013F081F1_049.ab1   461 
  509  C UCW064_H07_BE443187Td08P033A06P013F081R1_049.ab1   159 
  549    UCW063_H07_BE443187Td08P033A06P013F081F1_049.ab1   509 
  553  C UCW064_H07_BE443187Td08P033A06P013F081R1_049.ab1   115 
  577    UCW063_H07_BE443187Td08P033A06P013F081F1_049.ab1   537 
  581  C UCW064_H07_BE443187Td08P033A06P013F081R1_049.ab1    87 
  597    UCW063_H07_BE443187Td08P033A06P013F081F1_049.ab1   557 
  605  C UCW064_H07_BE443187Td08P033A06P013F081R1_049.ab1    63 
  645    UCW063_H07_BE443187Td08P033A06P013F081F1_049.ab1   605 
Contig length: old 713, new 714

Contig length: old 714, new 714
New start: 0