No. words: 1337; after pruning: 1311


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:626)  613  0.00 0.16 0.00  UCW063_A08_BE443187Td09P033A06P013F081F1_064.ab1        1   627 (44)  C UCW064_A08_BE443187Td09P033A06P013F081R1_064.ab1   (38)   628     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C UCW064_A08_BE443187Td09P033A06P013F081R1_064.ab1   666 
   48    UCW063_A08_BE443187Td09P033A06P013F081F1_064.ab1     9 
   52  C UCW064_A08_BE443187Td09P033A06P013F081R1_064.ab1   615 
   68    UCW063_A08_BE443187Td09P033A06P013F081F1_064.ab1    29 
   72  C UCW064_A08_BE443187Td09P033A06P013F081R1_064.ab1   595 
  100    UCW063_A08_BE443187Td09P033A06P013F081F1_064.ab1    61 
  104  C UCW064_A08_BE443187Td09P033A06P013F081R1_064.ab1   563 
  112    UCW063_A08_BE443187Td09P033A06P013F081F1_064.ab1    73 
  128  C UCW064_A08_BE443187Td09P033A06P013F081R1_064.ab1   539 
  160    UCW063_A08_BE443187Td09P033A06P013F081F1_064.ab1   121 
  196  C UCW064_A08_BE443187Td09P033A06P013F081R1_064.ab1   471 
  312    UCW063_A08_BE443187Td09P033A06P013F081F1_064.ab1   273 
  484  C UCW064_A08_BE443187Td09P033A06P013F081R1_064.ab1   183 
  532    UCW063_A08_BE443187Td09P033A06P013F081F1_064.ab1   493 
Contig length: old 710, new 710

Contig length: old 710, new 710
New start: 0