No. words: 1329; after pruning: 1303


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.4 (1,1:623)  608  0.00 0.00 0.16  UCW065_A02_BE443187Td09P033B06P013F081F1_016.ab1        1   624 (31)  C UCW066_A02_BE443187Td09P033B06P013F081R1_016.ab1   (51)   623     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C UCW066_A02_BE443187Td09P033B06P013F081R1_016.ab1   674 
  515    UCW065_A02_BE443187Td09P033B06P013F081F1_016.ab1   464 
  527  C UCW066_A02_BE443187Td09P033B06P013F081R1_016.ab1   148 
  563    UCW065_A02_BE443187Td09P033B06P013F081F1_016.ab1   512 
  587  C UCW066_A02_BE443187Td09P033B06P013F081R1_016.ab1    88 
  595    UCW065_A02_BE443187Td09P033B06P013F081F1_016.ab1   544 
Contig length: old 705, new 706

Contig length: old 706, new 706
New start: 0