No. words: 1363; after pruning: 1337


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.9 (1,1:644)  617  0.00 0.31 0.16  UCW008F_C02_BE443187Tu01P013F02F081F1_012.ab1        5   645 (37)  C UCW008R_C02_BE443187Tu01P013F02F081R1_012.ab1   (39)   642     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C UCW008R_C02_BE443187Tu01P013F02F081R1_012.ab1   681 
  580    UCW008F_C02_BE443187Tu01P013F02F081F1_012.ab1   543 
  588  C UCW008R_C02_BE443187Tu01P013F02F081R1_012.ab1    94 
  628    UCW008F_C02_BE443187Tu01P013F02F081F1_012.ab1   591 
  636  C UCW008R_C02_BE443187Tu01P013F02F081R1_012.ab1    46 
  652    UCW008F_C02_BE443187Tu01P013F02F081F1_012.ab1   615 
Contig length: old 718, new 719

Contig length: old 719, new 719
New start: 0