No. words: 1384; after pruning: 1358


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:659)  631  0.00 0.46 0.15  UCW008F_D02_BE443187Tu02P013F02F081F1_010.ab1        2   660 (31)  C UCW008R_D02_BE443187Tu02P013F02F081R1_010.ab1   (32)   661     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C UCW008R_D02_BE443187Tu02P013F02F081R1_010.ab1   693 
   63    UCW008F_D02_BE443187Tu02P013F02F081F1_010.ab1    29 
   67  C UCW008R_D02_BE443187Tu02P013F02F081R1_010.ab1   627 
  507    UCW008F_D02_BE443187Tu02P013F02F081F1_010.ab1   473 
  511  C UCW008R_D02_BE443187Tu02P013F02F081R1_010.ab1   183 
  563    UCW008F_D02_BE443187Tu02P013F02F081F1_010.ab1   529 
  571  C UCW008R_D02_BE443187Tu02P013F02F081R1_010.ab1   123 
  587    UCW008F_D02_BE443187Tu02P013F02F081F1_010.ab1   553 
  591  C UCW008R_D02_BE443187Tu02P013F02F081R1_010.ab1   103 
  659    UCW008F_D02_BE443187Tu02P013F02F081F1_010.ab1   625 
  681  C UCW008R_D02_BE443187Tu02P013F02F081R1_010.ab1    14 
  685    UCW008F_D02_BE443187Tu02P013F02F081F1_010.ab1   651 
Contig length: old 724, new 725

Contig length: old 725, new 725
New start: 0