No. words: 2526; after pruning: 2474


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 11.3 (1,1:588)  555  0.00 0.17 0.00  UCW030F_B11_BE444644At01P014G05P014G111F1_093.ab1        2   581 (64)  C UCW030R_B11_BE444644At01P014G05P014G111R1_093.ab1   (37)   589     9 *
Merge:(0)    2    0.0 10.5 (1,1:592)  552  0.00 0.17 0.34  UCW018F_G02_BE444644At01P014G05P014G111F1_004.ab1        1   591 (34)  C UCW018R_G02_BE444644At01P014G05P014G111R1_004.ab1   (37)   593     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 2       1        0
 8       1        0

Offset
  0       1 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  288 nodes

 146 str. conn. components

Path
    1  C UCW030R_B11_BE444644At01P014G05P014G111R1_093.ab1   626 
  539    UCW030F_B11_BE444644At01P014G05P014G111F1_093.ab1   502 
Contig length: old 682, new 682

Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C UCW018R_G02_BE444644At01P014G05P014G111R1_004.ab1   630 
   71    UCW018F_G02_BE444644At01P014G05P014G111F1_004.ab1    33 
   75  C UCW018R_G02_BE444644At01P014G05P014G111R1_004.ab1   556 
  539    UCW018F_G02_BE444644At01P014G05P014G111F1_004.ab1   501 
Contig length: old 662, new 663

Contig length: old 682, new 682
New start: 0 

Contig length: old 663, new 663
New start: 0