No. words: 2535; after pruning: 2483


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    9    0.0 11.1 (1,1:587)  551  0.17 0.17 0.00  UCW030F_B12_BE444644At02P014G05P014G111F1_094.ab1        1   579 (54)  C UCW030R_B12_BE444644At02P014G05P014G111R1_094.ab1   (38)   589    10 *
Merge:(0)    3    0.0 8.8 (1,1:593)  547  0.34 0.34 0.17  UCW018F_H02_BE444644At02P014G05P014G111F1_002.ab1        1   591 (38)  C UCW018R_H02_BE444644At02P014G05P014G111R1_002.ab1   (51)   595     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 3       1        0
 9       1        0

Offset
  0       1 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  286 nodes

 145 str. conn. components

Path
    1  C UCW030R_B12_BE444644At02P014G05P014G111R1_094.ab1   627 
  493    UCW030F_B12_BE444644At02P014G05P014G111F1_094.ab1   454 
Contig length: old 672, new 672

Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C UCW018R_H02_BE444644At02P014G05P014G111R1_002.ab1   646 
   55    UCW018F_H02_BE444644At02P014G05P014G111F1_002.ab1     4 
   63  C UCW018R_H02_BE444644At02P014G05P014G111R1_002.ab1   584 
   73    UCW018F_H02_BE444644At02P014G05P014G111F1_002.ab1    20 
Contig length: old 681, new 682

Contig length: old 672, new 672
New start: 0 

Contig length: old 682, new 682
New start: 0