No. words: 1270; after pruning: 1230


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:613)  568  0.00 0.16 0.65  UCW003F_A03_BE444644Ld01P002E04E101F1_017.ab1        1   616 (20)  C UCW003R_A03_BE444644Ld01P002E04E101R1_017.ab1   (21)   613     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C UCW003R_A03_BE444644Ld01P002E04E101R1_017.ab1   634 
   33    UCW003F_A03_BE444644Ld01P002E04E101F1_017.ab1    11 
   37  C UCW003R_A03_BE444644Ld01P002E04E101R1_017.ab1   598 
   41    UCW003F_A03_BE444644Ld01P002E04E101F1_017.ab1    19 
   45  C UCW003R_A03_BE444644Ld01P002E04E101R1_017.ab1   590 
   49    UCW003F_A03_BE444644Ld01P002E04E101F1_017.ab1    27 
  205  C UCW003R_A03_BE444644Ld01P002E04E101R1_017.ab1   430 
  225    UCW003F_A03_BE444644Ld01P002E04E101F1_017.ab1   203 
  229  C UCW003R_A03_BE444644Ld01P002E04E101R1_017.ab1   406 
  241    UCW003F_A03_BE444644Ld01P002E04E101F1_017.ab1   219 
  249  C UCW003R_A03_BE444644Ld01P002E04E101R1_017.ab1   386 
  265    UCW003F_A03_BE444644Ld01P002E04E101F1_017.ab1   243 
  281  C UCW003R_A03_BE444644Ld01P002E04E101R1_017.ab1   354 
  465    UCW003F_A03_BE444644Ld01P002E04E101F1_017.ab1   446 
  473  C UCW003R_A03_BE444644Ld01P002E04E101R1_017.ab1   162 
  493    UCW003F_A03_BE444644Ld01P002E04E101F1_017.ab1   474 
  501  C UCW003R_A03_BE444644Ld01P002E04E101R1_017.ab1   134 
  509    UCW003F_A03_BE444644Ld01P002E04E101F1_017.ab1   490 
  549  C UCW003R_A03_BE444644Ld01P002E04E101R1_017.ab1    86 
  561    UCW003F_A03_BE444644Ld01P002E04E101F1_017.ab1   542 
  565  C UCW003R_A03_BE444644Ld01P002E04E101R1_017.ab1    70 
  581    UCW003F_A03_BE444644Ld01P002E04E101F1_017.ab1   562 
  593  C UCW003R_A03_BE444644Ld01P002E04E101R1_017.ab1    42 
  601    UCW003F_A03_BE444644Ld01P002E04E101F1_017.ab1   582 
  616  C UCW003R_A03_BE444644Ld01P002E04E101R1_017.ab1    20 
  620    UCW003F_A03_BE444644Ld01P002E04E101F1_017.ab1   601 
  628  C UCW003R_A03_BE444644Ld01P002E04E101R1_017.ab1     8 
  632    UCW003F_A03_BE444644Ld01P002E04E101F1_017.ab1   613 
Contig length: old 656, new 655

Contig length: old 655, new 655
New start: 0