No. words: 1257; after pruning: 1231


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:589)  554  0.00 0.00 0.34  UCW018F_A01_BE444644Ld01P014G05P014G111F1_015.ab1        1   590 (40)  C UCW018R_A01_BE444644Ld01P014G05P014G111R1_015.ab1   (38)   589     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1  C UCW018R_A01_BE444644Ld01P014G05P014G111R1_015.ab1   627 
   70    UCW018F_A01_BE444644Ld01P014G05P014G111F1_015.ab1    32 
   78  C UCW018R_A01_BE444644Ld01P014G05P014G111R1_015.ab1   550 
  494    UCW018F_A01_BE444644Ld01P014G05P014G111F1_015.ab1   456 
  510  C UCW018R_A01_BE444644Ld01P014G05P014G111R1_015.ab1   118 
  542    UCW018F_A01_BE444644Ld01P014G05P014G111F1_015.ab1   504 
  546  C UCW018R_A01_BE444644Ld01P014G05P014G111R1_015.ab1    82 
  558    UCW018F_A01_BE444644Ld01P014G05P014G111F1_015.ab1   520 
  586  C UCW018R_A01_BE444644Ld01P014G05P014G111R1_015.ab1    42 
  598    UCW018F_A01_BE444644Ld01P014G05P014G111F1_015.ab1   560 
  606  C UCW018R_A01_BE444644Ld01P014G05P014G111R1_015.ab1    22 
  610    UCW018F_A01_BE444644Ld01P014G05P014G111F1_015.ab1   572 
Contig length: old 667, new 668

Contig length: old 668, new 668
New start: 0