No. words: 1274; after pruning: 1226


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:615)  570  0.00 0.16 0.65  UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1        1   618 (20)  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1   (21)   615     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1   636 
   35    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1    13 
   39  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1   598 
   43    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1    21 
   47  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1   590 
   51    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1    29 
  119  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1   518 
  139    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1   117 
  159  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1   478 
  167    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1   145 
  207  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1   430 
  227    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1   205 
  231  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1   406 
  247    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1   225 
  251  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1   386 
  267    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1   245 
  283  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1   354 
  356    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1   337 
  380  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1   257 
  384    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1   365 
  464  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1   173 
  468    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1   449 
  484  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1   153 
  496    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1   477 
  500  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1   137 
  512    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1   493 
  540  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1    97 
  548    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1   529 
  576  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1    61 
  580    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1   561 
  630  C UCW003R_C03_BE444644Ld03P002E04E101R1_018.ab1     8 
  634    UCW003F_C03_BE444644Ld03P002E04E101F1_018.ab1   615 
Contig length: old 658, new 657

Contig length: old 657, new 657
New start: 0