No. words: 1260; after pruning: 1234


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:596)  562  0.00 0.00 0.50  UCW018F_C01_BE444644Ld03P014G05P014G111F1_011.ab1        1   599 (28)  C UCW018R_C01_BE444644Ld03P014G05P014G111R1_011.ab1   (37)   596     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1  C UCW018R_C01_BE444644Ld03P014G05P014G111R1_011.ab1   633 
   97    UCW018F_C01_BE444644Ld03P014G05P014G111F1_011.ab1    60 
  129  C UCW018R_C01_BE444644Ld03P014G05P014G111R1_011.ab1   505 
  137    UCW018F_C01_BE444644Ld03P014G05P014G111F1_011.ab1   100 
  145  C UCW018R_C01_BE444644Ld03P014G05P014G111R1_011.ab1   489 
  161    UCW018F_C01_BE444644Ld03P014G05P014G111F1_011.ab1   124 
  257  C UCW018R_C01_BE444644Ld03P014G05P014G111R1_011.ab1   377 
  277    UCW018F_C01_BE444644Ld03P014G05P014G111F1_011.ab1   240 
  537  C UCW018R_C01_BE444644Ld03P014G05P014G111R1_011.ab1    97 
  557    UCW018F_C01_BE444644Ld03P014G05P014G111F1_011.ab1   520 
  589  C UCW018R_C01_BE444644Ld03P014G05P014G111R1_011.ab1    45 
  605    UCW018F_C01_BE444644Ld03P014G05P014G111F1_011.ab1   568 
Contig length: old 663, new 664

Contig length: old 664, new 664
New start: 0