No. words: 1269; after pruning: 1229


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:618)  577  0.00 0.16 0.48  UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1        1   620 (19)  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   (12)   618     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   630 
   32    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1    19 
   36  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   595 
   44    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1    31 
   96  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   535 
  100    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1    87 
  116  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   515 
  120    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   107 
  124  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   507 
  132    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   119 
  136  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   495 
  160    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   147 
  172  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   459 
  176    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   163 
  200  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   431 
  212    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   199 
  216  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   415 
  220    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   207 
  224  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   407 
  236    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   223 
  244  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   387 
  260    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   247 
  276  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   355 
  458    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   447 
  462  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   169 
  490    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   479 
  494  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   137 
  498    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   487 
  510  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   121 
  522    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   511 
  526  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1   105 
  554    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   543 
  558  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1    73 
  578    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   567 
  586  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1    45 
  594    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   583 
  611  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1    21 
  615    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   604 
  623  C UCW003R_D03_BE444644Ld04P002E04E101R1_026.ab1     9 
  627    UCW003F_D03_BE444644Ld04P002E04E101F1_026.ab1   616 
Contig length: old 650, new 650

Contig length: old 650, new 650
New start: 0