No. words: 845; after pruning: 819


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.9 (1,1:567)  207  4.91 0.75 0.00  UCW018F_H01_BE444644Ld08P014G05P014G111F1_001.ab1        2   266 (0)  C UCW018R_H01_BE444644Ld08P014G05P014G111R1_001.ab1   (11)   568   302 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  90 nodes

 47 str. conn. components

Path
    1  C UCW018R_H01_BE444644Ld08P014G05P014G111R1_001.ab1   579 
   19    UCW018F_H01_BE444644Ld08P014G05P014G111F1_001.ab1     9 
  166  C UCW018R_H01_BE444644Ld08P014G05P014G111R1_001.ab1   412 
  170    UCW018F_H01_BE444644Ld08P014G05P014G111F1_001.ab1   160 
  190  C UCW018R_H01_BE444644Ld08P014G05P014G111R1_001.ab1   388 
  194    UCW018F_H01_BE444644Ld08P014G05P014G111F1_001.ab1   184 
  202  C UCW018R_H01_BE444644Ld08P014G05P014G111R1_001.ab1   376 
  218    UCW018F_H01_BE444644Ld08P014G05P014G111F1_001.ab1   208 
  226  C UCW018R_H01_BE444644Ld08P014G05P014G111R1_001.ab1   352 
  236    UCW018F_H01_BE444644Ld08P014G05P014G111F1_001.ab1   226 
  252  C UCW018R_H01_BE444644Ld08P014G05P014G111R1_001.ab1   326 
Contig length: old 579, new 577

Contig length: old 577, new 577
New start: 0