No. words: 1265; after pruning: 1239


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 10.8 (1,1:591)  558  0.00 0.00 0.00  UCW018F_A02_BE444644Ld09P014G05P014G111F1_016.ab1        1   581 (54)  C UCW018R_A02_BE444644Ld09P014G05P014G111R1_016.ab1   (38)   592    12 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C UCW018R_A02_BE444644Ld09P014G05P014G111R1_016.ab1   630 
   70    UCW018F_A02_BE444644Ld09P014G05P014G111F1_016.ab1    32 
   74  C UCW018R_A02_BE444644Ld09P014G05P014G111R1_016.ab1   557 
  118    UCW018F_A02_BE444644Ld09P014G05P014G111F1_016.ab1    80 
  126  C UCW018R_A02_BE444644Ld09P014G05P014G111R1_016.ab1   505 
  478    UCW018F_A02_BE444644Ld09P014G05P014G111F1_016.ab1   440 
  490  C UCW018R_A02_BE444644Ld09P014G05P014G111R1_016.ab1   141 
  546    UCW018F_A02_BE444644Ld09P014G05P014G111F1_016.ab1   508 
  550  C UCW018R_A02_BE444644Ld09P014G05P014G111R1_016.ab1    81 
  558    UCW018F_A02_BE444644Ld09P014G05P014G111F1_016.ab1   520 
  562  C UCW018R_A02_BE444644Ld09P014G05P014G111R1_016.ab1    69 
  566    UCW018F_A02_BE444644Ld09P014G05P014G111F1_016.ab1   528 
  586  C UCW018R_A02_BE444644Ld09P014G05P014G111R1_016.ab1    45 
  614    UCW018F_A02_BE444644Ld09P014G05P014G111F1_016.ab1   576 
Contig length: old 673, new 673

Contig length: old 673, new 673
New start: 0