No. words: 1132; after pruning: 1106


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   10    0.0 8.4 (1,1:515)  482  0.00 0.20 0.00  UCW039a_E05_BE444644Ta13P001E10P022G071F1_039.ab1        1   506 (69)  C UCW040a_E05_BE444644Ta13P001E10P022G071R1_039.ab1   (40)   517    11 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
10       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C UCW040a_E05_BE444644Ta13P001E10P022G071R1_039.ab1   557 
  100    UCW039a_E05_BE444644Ta13P001E10P022G071F1_039.ab1    59 
  112  C UCW040a_E05_BE444644Ta13P001E10P022G071R1_039.ab1   446 
  120    UCW039a_E05_BE444644Ta13P001E10P022G071F1_039.ab1    79 
  132  C UCW040a_E05_BE444644Ta13P001E10P022G071R1_039.ab1   426 
  208    UCW039a_E05_BE444644Ta13P001E10P022G071F1_039.ab1   167 
  248  C UCW040a_E05_BE444644Ta13P001E10P022G071R1_039.ab1   310 
  268    UCW039a_E05_BE444644Ta13P001E10P022G071F1_039.ab1   227 
  292  C UCW040a_E05_BE444644Ta13P001E10P022G071R1_039.ab1   266 
  476    UCW039a_E05_BE444644Ta13P001E10P022G071F1_039.ab1   435 
  480  C UCW040a_E05_BE444644Ta13P001E10P022G071R1_039.ab1    78 
  492    UCW039a_E05_BE444644Ta13P001E10P022G071F1_039.ab1   451 
  504  C UCW040a_E05_BE444644Ta13P001E10P022G071R1_039.ab1    54 
  516    UCW039a_E05_BE444644Ta13P001E10P022G071F1_039.ab1   475 
  528  C UCW040a_E05_BE444644Ta13P001E10P022G071R1_039.ab1    30 
  532    UCW039a_E05_BE444644Ta13P001E10P022G071F1_039.ab1   491 
Contig length: old 616, new 616

Contig length: old 616, new 616
New start: 0