No. words: 1123; after pruning: 1097


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   15    0.0 7.7 (1,1:512)  473  0.00 0.20 0.00  UCW039a_G05_BE444644Ta15P001E10P022G071F1_035.ab1        1   498 (63)  C UCW040a_G05_BE444644Ta15P001E10P022G071R1_035.ab1   (48)   514    16 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
15       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C UCW040a_G05_BE444644Ta15P001E10P022G071R1_035.ab1   562 
  100    UCW039a_G05_BE444644Ta15P001E10P022G071F1_035.ab1    51 
  112  C UCW040a_G05_BE444644Ta15P001E10P022G071R1_035.ab1   451 
  128    UCW039a_G05_BE444644Ta15P001E10P022G071F1_035.ab1    79 
  132  C UCW040a_G05_BE444644Ta15P001E10P022G071R1_035.ab1   431 
  140    UCW039a_G05_BE444644Ta15P001E10P022G071F1_035.ab1    91 
  144  C UCW040a_G05_BE444644Ta15P001E10P022G071R1_035.ab1   419 
  168    UCW039a_G05_BE444644Ta15P001E10P022G071F1_035.ab1   119 
  188  C UCW040a_G05_BE444644Ta15P001E10P022G071R1_035.ab1   375 
  204    UCW039a_G05_BE444644Ta15P001E10P022G071F1_035.ab1   155 
  208  C UCW040a_G05_BE444644Ta15P001E10P022G071R1_035.ab1   355 
  544    UCW039a_G05_BE444644Ta15P001E10P022G071F1_035.ab1   495 
Contig length: old 610, new 610

Contig length: old 610, new 610
New start: 0