No. words: 1115; after pruning: 1089


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 10.5 (1,1:509)  475  0.00 0.20 0.00  UCW039a_D06_BE444644Ta20P001E10P022G071F1_042.ab1        1   499 (69)  C UCW040a_D06_BE444644Ta20P001E10P022G071R1_042.ab1   (36)   511    12 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C UCW040a_D06_BE444644Ta20P001E10P022G071R1_042.ab1   547 
  417    UCW039a_D06_BE444644Ta20P001E10P022G071F1_042.ab1   380 
  425  C UCW040a_D06_BE444644Ta20P001E10P022G071R1_042.ab1   123 
  481    UCW039a_D06_BE444644Ta20P001E10P022G071F1_042.ab1   444 
  493  C UCW040a_D06_BE444644Ta20P001E10P022G071R1_042.ab1    55 
  513    UCW039a_D06_BE444644Ta20P001E10P022G071F1_042.ab1   476 
Contig length: old 605, new 605

Contig length: old 605, new 605
New start: 0