No. words: 1117; after pruning: 1091


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 7.7 (1,1:509)  475  0.00 0.20 0.00  UCW039a_B05_BE444644Td10P001E10P022G071F1_045.ab1        1   499 (65)  C UCW040a_B05_BE444644Td10P001E10P022G071R1_045.ab1   (42)   511    12 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C UCW040a_B05_BE444644Td10P001E10P022G071R1_045.ab1   553 
  123    UCW039a_B05_BE444644Td10P001E10P022G071F1_045.ab1    80 
  127  C UCW040a_B05_BE444644Td10P001E10P022G071R1_045.ab1   427 
  539    UCW039a_B05_BE444644Td10P001E10P022G071F1_045.ab1   496 
Contig length: old 607, new 607

Contig length: old 607, new 607
New start: 0