No. words: 1269; after pruning: 1229


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:617)  573  0.16 0.16 0.48  UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1        1   619 (17)  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1   (16)   617     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1   633 
   29    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1    12 
   37  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1   597 
   45    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1    28 
   49  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1   585 
   53    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1    36 
  129  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1   505 
  153    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1   136 
  157  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1   477 
  165    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1   148 
  209  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1   425 
  221    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1   204 
  229  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1   405 
  241    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1   224 
  249  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1   385 
  265    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1   248 
  269  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1   365 
  273    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1   256 
  277  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1   357 
  463    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1   449 
  467  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1   167 
  491    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1   477 
  495  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1   139 
  507    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1   493 
  523  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1   111 
  555    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1   541 
  559  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1    75 
  563    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1   549 
  567  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1    67 
  575    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1   561 
  583  C UCW003R_E04_BE444644Tu02P002E04E101R1_023.ab1    51 
  587    UCW003F_E04_BE444644Tu02P002E04E101F1_023.ab1   573 
Contig length: old 651, new 650

Contig length: old 650, new 650
New start: 0