No. words: 559; after pruning: 533


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.5 (1,1:227)  206  0.00 0.88 0.00  UCW033_F05_BE444854Ta14P001B09P022F041R1_037.ab1        1   227 (52)  C UCW034_F05_BE444854Ta14P001B09P022F041F1_037.ab1   (51)   229     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  110 nodes

 57 str. conn. components

Path
    1  C UCW034_F05_BE444854Ta14P001B09P022F041F1_037.ab1   280 
   84    UCW033_F05_BE444854Ta14P001B09P022F041R1_037.ab1    31 
  100  C UCW034_F05_BE444854Ta14P001B09P022F041F1_037.ab1   181 
  124    UCW033_F05_BE444854Ta14P001B09P022F041R1_037.ab1    71 
  136  C UCW034_F05_BE444854Ta14P001B09P022F041F1_037.ab1   145 
  144    UCW033_F05_BE444854Ta14P001B09P022F041R1_037.ab1    91 
  152  C UCW034_F05_BE444854Ta14P001B09P022F041F1_037.ab1   129 
  184    UCW033_F05_BE444854Ta14P001B09P022F041R1_037.ab1   131 
  216  C UCW034_F05_BE444854Ta14P001B09P022F041F1_037.ab1    65 
  220    UCW033_F05_BE444854Ta14P001B09P022F041R1_037.ab1   167 
  232  C UCW034_F05_BE444854Ta14P001B09P022F041F1_037.ab1    49 
  236    UCW033_F05_BE444854Ta14P001B09P022F041R1_037.ab1   183 
Contig length: old 331, new 332

Contig length: old 332, new 332
New start: 0