No. words: 1672; after pruning: 1646


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 5.7 (1,1:1301)  355  0.82 0.00 0.00  UCW007F_D05_BE490237Ld04P002H06H121F1_041.ab1      509   876 (2)  C UCW007R_D05_BE490237Ld04P002H06H121R1_041.ab1   (0)   794   427 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  174 nodes

 89 str. conn. components

Path
    1    UCW007F_D05_BE490237Ld04P002H06H121F1_041.ab1     1 
  646  C UCW007R_D05_BE490237Ld04P002H06H121R1_041.ab1   657 
Contig length: old 1302, new 1302

Contig length: old 1302, new 1302
New start: 0