No. words: 1569; after pruning: 1543


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.4 (1,1:1311)  250  0.39 0.00 0.00  UCW007F_G05_BE490237Ld07P002H06H121F1_035.ab1      527   783 (0)  C UCW007R_G05_BE490237Ld07P002H06H121R1_035.ab1   (0)   786   530 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  128 nodes

 66 str. conn. components

Path
    1    UCW007F_G05_BE490237Ld07P002H06H121F1_035.ab1     1 
  534  C UCW007R_G05_BE490237Ld07P002H06H121R1_035.ab1   779 
  538    UCW007F_G05_BE490237Ld07P002H06H121F1_035.ab1   538 
  618  C UCW007R_G05_BE490237Ld07P002H06H121R1_035.ab1   695 
  622    UCW007F_G05_BE490237Ld07P002H06H121F1_035.ab1   622 
  658  C UCW007R_G05_BE490237Ld07P002H06H121R1_035.ab1   655 
Contig length: old 1312, new 1312

Contig length: old 1312, new 1312
New start: 0