No. words: 1604; after pruning: 1578


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:1301)  298  0.00 0.00 0.00  UCW007F_H05_BE490237Ld08P002H06H121F1_033.ab1      533   834 (0)  C UCW007R_H05_BE490237Ld08P002H06H121R1_033.ab1   (0)   770   469 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  148 nodes

 76 str. conn. components

Path
    1    UCW007F_H05_BE490237Ld08P002H06H121F1_033.ab1     1 
  601  C UCW007R_H05_BE490237Ld08P002H06H121R1_033.ab1   702 
  609    UCW007F_H05_BE490237Ld08P002H06H121F1_033.ab1   609 
  629  C UCW007R_H05_BE490237Ld08P002H06H121R1_033.ab1   674 
  637    UCW007F_H05_BE490237Ld08P002H06H121F1_033.ab1   637 
  645  C UCW007R_H05_BE490237Ld08P002H06H121R1_033.ab1   658 
Contig length: old 1302, new 1302

Contig length: old 1302, new 1302
New start: 0