No. words: 1797; after pruning: 1757


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:1328)  443  0.86 0.43 0.00  UCW007F_A06_BE490237Ld09P002H06H121F1_048.ab1      457   923 (0)  C UCW007R_A06_BE490237Ld09P002H06H121R1_048.ab1   (0)   874   406 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1    UCW007F_A06_BE490237Ld09P002H06H121F1_048.ab1     1 
  632  C UCW007R_A06_BE490237Ld09P002H06H121R1_048.ab1   699 
  636    UCW007F_A06_BE490237Ld09P002H06H121F1_048.ab1   636 
  656  C UCW007R_A06_BE490237Ld09P002H06H121R1_048.ab1   675 
  664    UCW007F_A06_BE490237Ld09P002H06H121F1_048.ab1   664 
  676  C UCW007R_A06_BE490237Ld09P002H06H121R1_048.ab1   655 
Contig length: old 1329, new 1330

Contig length: old 1330, new 1330
New start: 0