No. words: 1567; after pruning: 1541


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.8 (1,1:1278)  269  1.74 0.00 0.00  UCW007F_B06_BE490237Ld10P002H06H121F1_046.ab1      465   752 (0)  C UCW007R_B06_BE490237Ld10P002H06H121R1_046.ab1   (0)   815   528 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  136 nodes

 70 str. conn. components

Path
    1    UCW007F_B06_BE490237Ld10P002H06H121F1_046.ab1     1 
  564  C UCW007R_B06_BE490237Ld10P002H06H121R1_046.ab1   716 
  572    UCW007F_B06_BE490237Ld10P002H06H121F1_046.ab1   572 
  596  C UCW007R_B06_BE490237Ld10P002H06H121R1_046.ab1   684 
  608    UCW007F_B06_BE490237Ld10P002H06H121F1_046.ab1   608 
  628  C UCW007R_B06_BE490237Ld10P002H06H121R1_046.ab1   652 
Contig length: old 1279, new 1279

Contig length: old 1279, new 1279
New start: 0