No. words: 1660; after pruning: 1634


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.8 (1,1:1334)  288  0.93 0.93 0.62  UCW007F_D06_BE490237Tu02P002H06H121F1_042.ab1      575   898 (0)  C UCW007R_D06_BE490237Tu02P002H06H121R1_042.ab1   (0)   762   438 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  142 nodes

 73 str. conn. components

Path
    1    UCW007F_D06_BE490237Tu02P002H06H121F1_042.ab1     1 
  690  C UCW007R_D06_BE490237Tu02P002H06H121R1_042.ab1   646 
  694    UCW007F_D06_BE490237Tu02P002H06H121F1_042.ab1   694 
  722  C UCW007R_D06_BE490237Tu02P002H06H121R1_042.ab1   614 
  726    UCW007F_D06_BE490237Tu02P002H06H121F1_042.ab1   726 
  734  C UCW007R_D06_BE490237Tu02P002H06H121R1_042.ab1   602 
  742    UCW007F_D06_BE490237Tu02P002H06H121F1_042.ab1   742 
  746  C UCW007R_D06_BE490237Tu02P002H06H121R1_042.ab1   590 
Contig length: old 1335, new 1335

Contig length: old 1335, new 1335
New start: 0