No. words: 1797; after pruning: 1771


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 18.1 (1,1:863)  840  0.00 0.00 0.00  UCW007F_H10_BE494426At02P013H01H071F1_066.ab1        5   862 (39)  C UCW007R_H10_BE494426At02P013H01H071R1_066.ab1   (36)   860     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  430 nodes

 217 str. conn. components

Path
    1  C UCW007R_H10_BE494426At02P013H01H071R1_066.ab1   896 
   40    UCW007F_H10_BE494426At02P013H01H071F1_066.ab1     8 
  420  C UCW007R_H10_BE494426At02P013H01H071R1_066.ab1   477 
  456    UCW007F_H10_BE494426At02P013H01H071F1_066.ab1   424 
  628  C UCW007R_H10_BE494426At02P013H01H071R1_066.ab1   269 
  668    UCW007F_H10_BE494426At02P013H01H071F1_066.ab1   636 
  676  C UCW007R_H10_BE494426At02P013H01H071R1_066.ab1   221 
  888    UCW007F_H10_BE494426At02P013H01H071F1_066.ab1   856 
Contig length: old 933, new 933

Contig length: old 933, new 933
New start: 0