No. words: 1840; after pruning: 1814


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.7 (1,1:911)  875  0.11 0.22 0.11  UCW007F_A09_BE494426Ld01P013H01H071F1_079.ab1        1   911 (0)  C UCW007R_A09_BE494426Ld01P013H01H071R1_079.ab1   (16)   913     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  446 nodes

 225 str. conn. components

Path
    1  C UCW007R_A09_BE494426Ld01P013H01H071R1_079.ab1   929 
   33    UCW007F_A09_BE494426Ld01P013H01H071F1_079.ab1    15 
   69  C UCW007R_A09_BE494426Ld01P013H01H071R1_079.ab1   861 
   78    UCW007F_A09_BE494426Ld01P013H01H071F1_079.ab1    60 
  394  C UCW007R_A09_BE494426Ld01P013H01H071R1_079.ab1   536 
  918    UCW007F_A09_BE494426Ld01P013H01H071F1_079.ab1   900 
Contig length: old 929, new 929

Contig length: old 929, new 929
New start: 0