No. words: 1845; after pruning: 1819


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 16.8 (1,1:913)  876  0.22 0.11 0.00  UCW007F_D09_BE494426Ld04P013H01H071F1_073.ab1        1   906 (3)  C UCW007R_D09_BE494426Ld04P013H01H071R1_073.ab1   (22)   914     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  450 nodes

 227 str. conn. components

Path
    1  C UCW007R_D09_BE494426Ld04P013H01H071R1_073.ab1   936 
   38    UCW007F_D09_BE494426Ld04P013H01H071F1_073.ab1    15 
  558  C UCW007R_D09_BE494426Ld04P013H01H071R1_073.ab1   379 
Contig length: old 936, new 936

Contig length: old 936, new 936
New start: 0