No. words: 1843; after pruning: 1817


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 17.7 (1,1:909)  874  0.00 0.00 0.11  UCW007F_E09_BE494426Ld05P013H01H071F1_071.ab1       12   910 (6)  C UCW007R_E09_BE494426Ld05P013H01H071R1_071.ab1   (29)   898     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  448 nodes

 226 str. conn. components

Path
    1  C UCW007R_E09_BE494426Ld05P013H01H071R1_071.ab1   927 
   33    UCW007F_E09_BE494426Ld05P013H01H071F1_071.ab1    15 
  601  C UCW007R_E09_BE494426Ld05P013H01H071R1_071.ab1   327 
  923    UCW007F_E09_BE494426Ld05P013H01H071F1_071.ab1   906 
Contig length: old 933, new 933

Contig length: old 933, new 933
New start: 0